Your Partner in Clinical Project Management

Turn complex protocols into clear execution plans with Protocol AI and experienced clinical operations support, so studies move faster, cost less, and stay inspection-ready.

How Protocol AI Works

1. Upload Protocol

2. AI Reads Everything

2. AI Reads Everything

Drop in your study protocol document to get started — no manual setup required.

2. AI Reads Everything

2. AI Reads Everything

2. AI Reads Everything

Protocol AI parses the full protocol — visits, procedures, endpoints, and requirements — in minutes.

3. Plan Auto-Generated

2. AI Reads Everything

3. Plan Auto-Generated

A complete operational plan is built automatically — tasks, timelines, and site workflows, ready to run.

4. Team Executes

5. Study Closes Clean

3. Plan Auto-Generated

Your team runs the study with clear tasks, ownership, and tracking from startup through monitoring.

5. Study Closes Clean

5. Study Closes Clean

5. Study Closes Clean

Documentation, TMF, and reporting stay inspection-ready, so close-out is smooth and compliant.

Clinical research professional in blue gloves using a tablet to manage clinical trial tasks
Clinical Trial Management, Made Simpler

Protocol AI

Protocol AI helps clinical teams move from protocol to execution in minutes. Upload a protocol, generate an operational plan, and manage study startup, sites, monitoring, TMF activities, adverse events, and reporting with a workflow built for compliant clinical trial execution.

Built for Regulatory-Grade Clinical Operations

21 CFR Part 11 Alignment

HIPAA-Conscious Data Handling

HIPAA-Conscious Data Handling

Audit trails, electronic records, and access controls designed to support FDA 21 CFR Part 11 expectations.

HIPAA-Conscious Data Handling

HIPAA-Conscious Data Handling

HIPAA-Conscious Data Handling

Protected health information is handled with encryption in transit and at rest, plus role-based access controls.

ICH-GCP Workflow Fit

You Keep Your Systems

You Keep Your Systems

Task, visit, and TMF workflows map to GCP so your study stays inspection-ready by default.

You Keep Your Systems

You Keep Your Systems

You Keep Your Systems

Works alongside Veeva, Medidata, and your eTMF. No rip-and-replace, and you retain ownership of your study data.

About Us

Our Mission

Our mission is to help clinical, regulatory, and medical affairs teams reduce friction, improve study execution, and bring promising therapies to patients faster through practical workflow design and Protocol AI.

Our Vision

We believe trial execution should be faster, clearer, and more accountable. By combining human judgment with explainable AI, we help teams plan better, coordinate faster, and deliver studies with stronger operational control.

About Manakiki

Manakiki works alongside sponsors, CROs, and internal teams to solve operational bottlenecks in clinical trials. We support clinical operations, medical affairs, and regulatory work with practical execution support and Protocol AI-driven planning rather than forcing teams to replace the systems they already use.

Our Founders

Our founders focus on complex healthcare execution problems where speed, compliance, and coordination matter. That perspective shaped Protocol AI and our hands-on approach to helping teams manage trial operations with precision and accountability.

Frequently Asked Questions

A few things teams often ask us. If your question isn't here, reach out anytime at jmodi@manakiki.net and we'll be glad to help.

We help teams run clinical trials more easily. We do this in two ways: software and support. Our software, Protocol AI, manages the whole trial in one place, and our analytics turn your trial data into clear dashboards. On the support side, our team can help with day-to-day clinical operations and medical affairs. You can use just the software, just the support, or both.

Mostly small and mid-size biotechs and research teams who need the kind of control big sponsors have, but without a huge budget or a large operations team. If you are running trials and want to stay organized, compliant, and on schedule, we built this for you.

You drop in your protocol and Protocol AI turns it into a clear, working plan. It maps out visits, tasks, and timelines, flags what needs attention, and keeps your documents and data organized in one place. Across its modules it covers study setup, sites, participants, visits, safety, supplies, and reporting, so your team spends less time on busywork and more time on the trial itself.

We want to change how Clinical Affairs, Medical Affairs, and Regulatory Affairs work day to day. These teams carry a lot of the weight in bringing a drug to patients, yet they often lose time to manual steps, scattered data, and slow handoffs. Our goal is simple: make pharma teams more efficient so good medicines reach the market faster and at a lower cost. When trials run smoothly and decisions are backed by clear data, patients wait less and resources go further.

Yes. Beyond running trials, we help Medical Affairs and Regulatory Affairs teams work faster and with less friction. That means cleaner data for evidence and publications, clear records for submissions, and tools that keep everyone aligned on compliance and governance. The aim is always the same: fewer delays, lower cost, and a quicker path to approval so treatments reach the people who need them.

We will tell you honestly. If we do not know something, we will say so rather than guess. Then we roll up our sleeves and do everything possible to find the answer and a real solution for you, whether that means digging into the data, bringing in the right expert, or building something new. You will always know where things stand, and we will not stop until your problem is sorted out.

No. We are not here to replace the platforms or partners you trust, like Veeva Vault, Medidata, CliniOps, PIhealth.ai, or your CRO. We are the project management team that helps you get the most out of them. Think of us as problem solvers who sit on your side of the table, connecting your tools, your data, and your people so the whole project moves forward. Our only goal is to make your trial successful.

Yes. Protocol AI is Manakiki's AI-enabled clinical trial management system (CTMS) and clinical project management platform. Instead of starting from a blank study build, you upload your protocol and Protocol AI generates the operational plan: visits, tasks, milestones, and timelines. It includes 18 integrated modules, 150+ clinical forms, RAID and CAPA logs, and 21 CFR Part 11-aligned audit trails, and it works alongside systems like Veeva, Medidata, and your eTMF.

Early Tester pricing starts at $4,999 per study per year for 1 to 4 sites (standard rate $9,999), locked in for life. Enterprise plans for 5+ sites are $19,999 per study per year and add Veeva Vault sync, EDC API integration, and a dedicated customer success manager. See our Pricing page or book a demo for details.

Beyond software, Manakiki provides clinical trial consulting, clinical project management, clinical data analytics dashboards, and help finding vetted clinical, medical, and regulatory talent. We support small and mid-size biotechs, research sites, and sponsor teams with study startup, day-to-day clinical operations, and medical affairs.

Contact Us

Let us help with your next project

Tell us what study, protocol, or operational challenge you are working on, and we will show you how Protocol AI and targeted clinical operations support can help move it forward. A real person will respond.

Manakiki

Torrance, CA & Dover, DE

+1.4243278461 / jmodi@manakiki.net

Hours

Open today

09:00 am – 05:00 pm

Tell us about your study

Attach Files
Attachments (0)

This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.

Cancel